Troponin I (TnI) regulates thin filament activation and muscle contraction. Two isoforms, TnI-fast (TNNI2) and TnI-slow (TNNI1), are predominantly expressed in fast- and slow-twitch myofibers respectively. TNNI2 variants are a rare cause of arthrogryposis, while TNNI1 variants have not been conclusively established to cause skeletal myopathy. We identified both recessive loss-of-function TNNI1 variants, as well as dominant gain-of-function TNNI1 variants as a cause of muscle disease, each with distinct physiological consequences and disease mechanisms. For the loss-of-function scenario, we report three families with biallelic TNNI1 variants (F1: p.R14H/c.190-9G>A, F2 and F3: homozygous p.R14C), manifesting with early onset progressive muscle weakness and rod formation on muscle histology. For the gain-of-function scenario, we report two families with a dominantly acting heterozygous TNNI1 variant (F4: p.R174Q, F5: p.K176del), manifesting with muscle cramping, myalgias, and rod formation in F5. In zebrafish, TnI proteins with either of the missense variants (p.R14H; p.R174Q) incorporate into thin filaments. Molecular dynamics simulations suggest that the loss-of-function p.R14H variant decouples TnI from TnC, which was supported by functional studies showing a reduced force response of sarcomeres to submaximal [Ca2+] in patient’s myofibers. This contractile deficit was reversed by a novel slow skeletal muscle troponin activator. In contrast, patient’s myofibers with the gain-of-function p.R174Q variant showed an increased force to submaximal [Ca2+], which was reversed by the small-molecule drug mavacamten. Our findings demonstrate that TNNI1 variants cause muscle disease with variant-specific pathomechanisms, manifesting as either a hypo- or a hypercontractile phenotype, suggesting rational therapeutic strategies for each mechanism.